PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s752721g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 891aa    MW: 98673.8 Da    PI: 6.1692
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s752721g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-06590610526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+f++  G C+ Gd CkF+H+
  PDK_30s752721g001 590 YCNFYLM-GRCQQGDLCKFSHD 610
                        6999999.*************7 PP

2zf-CCCH20.11.1e-06672692525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C++f+  G C++Gd+CkF+H
  PDK_30s752721g001 672 PCHNFSSKGMCSRGDKCKFSH 692
                        7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-6585610IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371585612IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014586611IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4589610IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.314642666IPR000571Zinc finger, CCCH-type
SMARTSM003560.17642668IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-5644667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892667695IPR000571Zinc finger, CCCH-type
SMARTSM003560.17670694IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6671700IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4672693IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MEDLVRSPAP ELQTLNPRME GFSRSASRTP RRSHLDSASY RTLVRIFSLC LDESLGRPQE  60
SRKDPNPRSD DVPESSCTGK DSIFGRSGDG NVAEEIGRGR KGEGHSGFEG SERGEFGGSE  120
RSQGSACGNP RFDDSSLNGN ISSREELGHE NGTSVELPEA LVFEKLQSGG IKDEASHRME  180
ELGHGSGREE CDQSANGGTQ KALLFTDLEH LLHENINSVE QPGNGELLND IIFDFSGLID  240
NPNDLVCSAG SQDGQRQLGH GELANNELRK DVPLRNTKLA DSKNQNSCSG QGKNHEPQDE  300
SSKIIFSGDK MIYSSEELLH GKMREGHGEC VNDVLTKHMF PDKHMMDGVR HKEIKSVKEL  360
GEVLHEETHC CSDSLMEGSE SRELAIPVLA SEDSGDIEEG EIPGELNISN QDLDMDLDLV  420
HEHAVLEDRN IEEGTTYCGS PKKGDTNMTC LDEGMHSRES NYKDDESAVP IHITKGDIMH  480
VSGDDRYSET QMKKSYSSGM RVDVKRPAVD SEALGLPGEN LGNIISQNKE KPSNHEAVEA  540
RLKRKRGALT EERKAKRKKA KKRKRAQKER EQGVKRLKLQ PISKPKTVKY CNFYLMGRCQ  600
QGDLCKFSHD TTPLTKSQLD AWPPCFELYS QLPLDGTRVA WYYQYEPCTY FARDSCLKGD  660
DCPFDHQLSK YPCHNFSSKG MCSRGDKCKF SHKITTNEAS SSIPIISNSK SPLTSENLNF  720
RKQNTTNSTS IVACGPPKTT TSCTPFPIQK NMEGDTIKPP KIPMRIPNGI RFLSFGKGPS  780
DSINRQHHDN LLLKERKILD QQNQEKFLMD GHKNDTDDIS LAQTSLLKVH SESNVMSGGA  840
AYSAINTLDN KNLKNKSISS VSSVVPGSRS LHSEVSDASK ILEEFLFSGV S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1541558LKRKRGALTEERKAKRKK
2542561KRKRGALTEERKAKRKKAKK
3543564RKRGALTEERKAKRKKAKKRKR
4556577RKKAKKRKRAQKEREQGVKRLK
5559565AKKRKRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807156.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743